YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S1PR2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGLYSEYLN PEKVQEHYNY TKETLDMQET PSRKVASAFI IILCCAIVVE NLLVLIAVAR  60
   61 NSKFHSAMYL FLGNLAASDL LAGVAFVANT LLSGPVTLSL TPLQWFAREG SAFITLSASV 120
  121 FSLLAIAIER QVAIAKVKLY GSDKSCRMLM LIGASWLISL ILGGLPILGW NCLDHLEACS 180
  181 TVLPLYAKHY VLCVVTIFSV ILLAIVALYV RIYFVVRSSH ADVAGPQTLA LLKTVTIVLG 240
  241 VFIICWLPAF SILLLDSTCP VRACPVLYKA HYFFAFATLN SLLNPVIYTW RSRDLRREVL 300
  301 RPLLCWRQGK GATGRRGGNP GHRLLPLRSS SSLERGLHMP TSPTFLEGNT VV

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.95
Transmembrane Helix	35	58	0.89
Cytoplasmic	59	67	0.86
Transmembrane Helix	68	92	0.83
Non-Cytoplasmic	93	109	0.82
Transmembrane Helix	110	128	0.94
Cytoplasmic	129	147	0.89
Transmembrane Helix	148	170	0.91
Non-Cytoplasmic	171	189	0.91
Transmembrane Helix	190	213	0.90
Cytoplasmic	214	229	0.93
Transmembrane Helix	230	252	0.90
Non-Cytoplasmic	253	269	0.88
Transmembrane Helix	270	290	0.90
Cytoplasmic	291	352	0.96