YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MC4R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTHHHGMY TSLHLWNRSS HGLHGNASES LGKGHSDGGC YEQLFVSPEV FVTLGVISLL  60
   61 ENILVIVAIA KNKNLHSPMY FFICSLAVAD MLVSVSNGSE TIVITLLNST DTDAQSFTVN 120
  121 IDNVIDSVIC SSLLASICSL LSIAVDRYFT IFYALQYHNI MTVRRVGIII SCIWAACTVS 180
  181 GVLFIIYSDS SAVIICLITM FFTMLVLMAS LYVHMFLMAR LHIKRIAVLP GTGTIRQGAN 240
  241 MKGAITLTIL IGVFVVCWAP FFLHLLFYIS CPQNPYCVCF MSHFNLYLIL IMCNAVIDPL 300
  301 IYALRSQELR KTFKEIICFY PLGGICELPG RY

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.63
Transmembrane Helix	50	69	0.67
Cytoplasmic	70	78	0.76
Transmembrane Helix	79	98	0.84
Non-Cytoplasmic	99	123	0.88
Transmembrane Helix	124	145	0.87
Cytoplasmic	146	165	0.83
Transmembrane Helix	166	187	0.95
Non-Cytoplasmic	188	193	0.80
Transmembrane Helix	194	216	0.94
Cytoplasmic	217	243	0.92
Transmembrane Helix	244	266	0.91
Non-Cytoplasmic	267	282	0.87
Transmembrane Helix	283	304	0.89
Cytoplasmic	305	332	0.95