YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NUP54_RAT
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNFGAPSG TSGTSTATAA PAGGFGGFGT TTTTAGSAFS FSAPTNTGST GLLGGTQNKG  60
   61 FGFGTGFGTS TGTGTGLGTG LGTGLGFGGF NTQQQQQQQQ TSLGGLFSQP AQAPAQSNQL 120
  121 INTASALSAP TLLGDERDAI LAKWNQLQAF WGTGKGYFNN NIPPVEFTQE NPFCRFKAVG 180
  181 YSCMPNNKDE DGLVVLIFNK KETDIRSQQQ QLVESLHKVL GGNQTLTVNV EGIKTLPDDQ 240
  241 TEVVIYIVER SPNGTSRRVP ATTLYAHFEQ ANIKTQLQQL GVTLSMTRTE LSPAQIKQLL 300
  301 QNPPAGVDPI IWEQAKVDNP DSEKLIPVPM VGFKELLRRL KVQDQMTKQH QTRLDIISED 360
  361 ISELQKNQTT TMAKIAQYKR KLMDLSHRTL QVLIKQEIQR KSGYAIQAEE EQLRVQLDTI 420
  421 QGELNAPTQF KGRLNELMSQ IRMQNHFGAV KSEEKYYIDA DLLREIKQHL KQQQEGLSHL 480
  481 ISIIKDDLED IKLVEHGLNE TIHSRGGVFS

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.49
Transmembrane Helix	19	41	0.51
Cytoplasmic	42	65	0.55
Transmembrane Helix	66	90	0.67
Non-Cytoplasmic	91	510	0.97