YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAC3_RAT
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.67
Transmembrane Helix	9	30	0.74
Non-Cytoplasmic	31	76	0.79
Transmembrane Helix	77	95	0.93
Cytoplasmic	96	135	0.77
Transmembrane Helix	136	161	0.66
Non-Cytoplasmic	162	168	0.81
Transmembrane Helix	169	189	0.95
Cytoplasmic	190	199	0.89
Transmembrane Helix	200	222	0.89
Non-Cytoplasmic	223	230	0.79
Transmembrane Helix	231	251	0.88
Cytoplasmic	252	751	0.98
Transmembrane Helix	752	773	0.89
Non-Cytoplasmic	774	787	0.56
Transmembrane Helix	788	806	0.70
Cytoplasmic	807	826	0.79
Transmembrane Helix	827	848	0.88
Non-Cytoplasmic	849	857	0.80
Transmembrane Helix	858	881	0.92
Cytoplasmic	882	898	0.92
Transmembrane Helix	899	921	0.88
Non-Cytoplasmic	922	927	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWLRLQPLT SAFLHFGLVT FVLFLNGLRA EAGDLRDVPS AGQNNESCSG SSDCKEGVIL  60
   61 PIWYPENPSL GDKIARVIVY FVALIYMFLG VSIIADRFMA SIEVITSQER EVTIKKPNGE 120
  121 TSTTTIRVWN ETVSNLTLMA LGSSAPEILL SLIEVCGHGF IAGDLGPSTI VGSAAFNMFI 180
  181 IIGICVYVIP DGETRKIKHL RVFFVTAAWS VFAYIWLYMI LAVFSPGVVQ VWEGLLTLFF 240
  241 FPVCVLLAWV ADKRLLFYKY MHKRYRTDKH RGIIIETEGE HPKGIEMDGK MMNSHFLDGN 300
  301 LIPLEGKEVD ESRREMIRIL KDLKQKHPEK DLDQLVEMAN YYALSHQQKS RAFYRIQATR 360
  361 MMTGAGNILK KHAAEQAKKT ASMSEVHTDE PEDFASKVFF DPCSYQCLEN CGAVLLTVVR 420
  421 KGGDISKTMY VDYKTEDGSA NAGADYEFTE GTVVLKPGET QKEFSVGIID DDIFEEDEHF 480
  481 FVRLSNVRVE EEQLEEGMTP AILNSLPLPR AVLASPCVAT VTILDDDHAG IFTFECDTIH 540
  541 VSESIGVMEV KVLRTSGARG TVIVPFRTVE GTAKGGGEDF EDTYGELEFK NDETVKTIRV 600
  601 KIVDEEEYER QENFFIALGE PKWMERGISA LLLSPEVTDR KLTMEEEEAK RIAEMGKPVL 660
  661 GEHPKLEVII EESYEFKSTV DKLIKKTNLA LVVGTHSWRD QFMEAITVSA AGDEEEDESG 720
  721 EERLPSCFDY VMHFLTVFWK VLFACVPPTE YCHGWACFVV SILIIGMLTA IIGDLASHFG 780
  781 CTIGLKDSVT AVVFVAFGTS VPDTFASKAA ALQDVYADAS IGNVTGSNAV NVFLGIGLAW 840
  841 SVAAIYWAMQ GQEFHVSAGT LAFSVTLFTI FAFVCLSVLL YRRRPHLGGE LGGPRGCKLA 900
  901 TTWLFVSLWL LYVLFATLEA YCYIKGF