YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1871631
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHSLRYFLT AVSRPGLGEP WFIIVGYVDD TEFVRYDSDA ENPRMEPRVQ WIEREGPEYW  60
   61 EEQTQRAKGH EQVNRVDLRT LRGYYNQSEG GSHTIQVMFG CDVGTDWSLL RGYRQDAYDG 120
  121 RDYIALNEDL KTWTAADFAA QITRSKWDQA GDADYYKAYL EGECVEGLRR YLEHGKERLL 180
  181 RSDPPKAHVT LHPRPEGDVT LRCWALGFYP ADITLTWQLN GEDLTQDMEL VETRPAGDGT 240
  241 FQKWASVVVP LGKEQNYTCR VEHEGLPEPL SQRWEPPPST DSNMETTVIY VVLGAVAIIA 300
  301 AVIIGAVVAV VRRRRRNTGG KGDYTPAPGT DSSQSSDVSL PDCKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	287	0.98
Transmembrane Helix	288	311	0.94
Cytoplasmic	312	345	0.99