YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DEGS2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNSAARSDF EWVYSDQPHT QRRKEMLAKY PSIKALMRPD PNIKWTVLGM VLVQVLACWL  60
   61 VRGLSWRWLL FWAYAFGGCI NHSLTLAIHD ISHNTAFGTR CASRNRWFAV FANLPIGLPY 120
  121 ATSFKKYHVD HHRYLGGDGL DVDIPTDFEG WFFCTPARKL LWLVLQPFFY SLRPLYVNPK 180
  181 AVTRMEILNA LVQLAFNVTI FALWGIKAIV YLLASSLLGL GLHPISGHFV AEHYMFLKGH 240
  241 ETYSYYGPLN WITFNVGYHV EHHDFPSIPG CYLPLVRMIA PEYYDHLPQH HSWVKVLWDF 300
  301 VFEDSLGPYS RVKRKCKLAK DQL

Type	Start	End	Confidence
Cytoplasmic	1	42	0.94
Transmembrane Helix	43	63	0.90
Non-Cytoplasmic	64	69	0.73
Transmembrane Helix	70	89	0.89
Cytoplasmic	90	106	0.76
Transmembrane Helix	107	124	0.65
Non-Cytoplasmic	125	159	0.63
Transmembrane Helix	160	177	0.43
Cytoplasmic	178	186	0.65
Transmembrane Helix	187	206	0.67
Non-Cytoplasmic	207	207	0.38
Transmembrane Helix	208	230	0.65
Cytoplasmic	231	323	0.64