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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|204674, gi|111839
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKMSSFLH IGDICSLYAE GSTNGFISTL GLVDDRCVVQ PEAGDLNNPP KKFRDCLFKL  60
   61 CPMNRYSAQK QFWKAAKPGA NSTTDAVLLN KLHHAADLEK KQNETENRKL LGTVIQYGNV 120
  121 IQLLHLKSNK YLTVNKRLPA LLEKNAMRVT LDEAGNEGSW FYIQPFYKLR SIGDSVVIGD 180
  181 KVVLNPVNAG QPLHASSHQL VDNPGCNEVN SVNCNTSWKI VLFMKWSDNK DDILKGGDVV 240
  241 RLFHAEQEKF LTCDEHRKKQ HVFLRTTGRQ SATSATSSKA LWEVEVVQHD PCRGGAGYWN 300
  301 SLFRFKHLAT GHYLAAEVDP DQDASRSRLR NAQEKMVYSL VSVPEGNDIS SIFELDPTTL 360
  361 RGGDSLVPRN SYVRLRHLCT NTWVHSTNIP IDKEEEKPVM LKIGTSPLKE DKEAFAIVPV 420
  421 SPAEVRDLDF ANDASKVLGS IAGKLEKGTI TQNERRSVTK LLEDLVYFVT GGTNSGQDVL 480
  481 EVVFSKPNRE RQKLMREQNI LKQIFKLLQA PFTDCGDGPM LRLEELGDQR HAPFRHICRL 540
  541 CYRVLRHSQQ DYRKNQEYIA KQFGFMQKQI GYDVLAEDTI TALLHNNRKL LEKHITAAEI 600
  601 DTFVSLVRKN REPRFLDYLS DLCVSMNKSI PVTQELICKA VLNPTNADIL IETKLVLSRF 660
  661 EFEGVSTGEN ALEAGEDEEE VWLFWRDSNK EIRSKSVREL AQDAKEGQKE DRDVLSYYRY 720
  721 QLNLFARMCL DRQYLAINEI SGQLDVDLIL RCMSDENLPY DLRASFCRLM LHMHVDRDPQ 780
  781 EQVTPVKYAR LWSEIPSEIA IDDYDSSGAS KDEIKERFAQ TMEFVEEYLR DVVCQRFPFS 840
  841 DKEKNKLTFE VVNLARNLIY FGFYNFSDLL RLTKILLAIL DCVHVTTIFP ISKMTKGEEN 900
  901 KGSNVMRSIH GVGELMTQVV LRGGGFLPMT PMAAAPEGNV KQAEPEKEDI MVMDTKLKII 960
  961 EILQFILNVR LDYRISCLLC IFKREFDESN SQSSETSSGN SSQEGPSNVP GALDFEHIEE1020
 1021 QAEGIFGGSE ENTPLDLDDH GGRTFLRVLL HLTMHDYPPL VSGALQLLFR HFSQRQEVLQ1080
 1081 AFKQVQLLVT SQDVDNYKQI KQDLDQLRSI VEKSELWVYK GQGPDEPMDG ASGENEHKKT1140
 1141 EEGTSKPLKH ESTSSYNYRV VKEILIRLSK LCVQESASVR KSRKQQQRLL RNMGAHAVVL1200
 1201 ELLQIPYEKA EDTKMQEIMR LAHEFLQNFC AGNQQNQALL HKHINLFLNP GILEAVTMQH1260
 1261 IFMNNFQLCS EINERVVQHF VHCIETHGRN VQYIKFLQTI VKAEGKFIKK CQDMVMAELV1320
 1321 NSGEDVLVFY NDRASFQTLI QMMRSERDRM DENSPLFMYH IHLVELLAVC TEGKNVYTEI1380
 1381 KCNSLLPLDD IVRVVTHEDC IPEVKIAYIN FLNHCYVDTE VEMKEIYTSN HMWKLFENFL1440
 1441 VDICRACNNT SDRKHADSVL EKYVTEIVMS IVTTFFSSPF SDQSTTLQTR QPVFVQLLQG1500
 1501 VFRVYHCNWL MPSQKASVES CIRVLSDVAK SRAIAIPVDL DSQVNNLFLK SHNIVQKTAM1560
 1561 NWRLSARNAA RRDSVLAASR DYRNIIERLQ DIVSALEDRL RPLVQAELSV LVDVLHRPEL1620
 1621 LFPENTDARR KCESGGFICK LIKHTKQLLE ENEEKLCIKV LQTLREMMTK DRGYGEKQIS1680
 1681 IDELENAELP QPPEAENSTE ELEPSPPLRQ LEDHKRGEAL RQILVNRYYG NIRPSGRRES1740
 1741 LTSFGNGPLS PGGPSKPGGG GGGPGSGSTS RGEMSLAEVQ CHLDKEGASN LVIDLIMNAS1800
 1801 SDRVFHESIL LAIALLEGGN TTIQHSFFCR LTEDKKSEKF FKVFYDRMKV AQQEIKATVT1860
 1861 VNTSDLGNKK KDDEVDRDAP SRKKAKEPTT QITEEVRDQL LEASAATRKA FTTFRREADP1920
 1921 DDHYQSGEGT QATTDKAKDD LEMSAVITIM QPILRFLQLL CENHNRDLQN FLRCQNNKTN1980
 1981 YNLVCETLQF LDCICGSTTG GLGLLGLYIN EKNVALINQT LESLTEYCQG PCHENQNCIA2040
 2041 THESNGIDII TALILNDINP LGKKRMDLVL ELKNNASKLL LAIMESRHDS ENAERILYNM2100
 2101 RPKELVEVIK KAYMQGEVEF EDGENGEDGA ASPRNVGHNI YILAHQLARH NKELQTMLKP2160
 2161 GGQVDGDEAL EFYAKHTAQI EIVRLDRTME QIVFPVPSIC EFLTKESKLR IYYTTERDEQ2220
 2221 GSKINDFFLR SEDLFNEMNW QKKLRAQPVL YWCARNMSFW SSISFNLAVL MNLLVAFFYP2280
 2281 FKGVRGGTLE PHWSGLLWTA MLISLAIVIA LPKPHGIRAL IASTILRLIF SVGLQPTLFL2340
 2341 LGAFNVCNKI IFLMSFVGNC GTFTRGYRAM VLDVEFLYHL LYLLICAMGL FVHEFFYSLL2400
 2401 LFDLVYREET LLNVIKSVTR NGRPIILTAA LALILVYLFS IVGYLFFKDD FILEVDRLPN2460
 2461 ETAGPETGES LANDFLYSDV CRVETGENCT SPAPKEELLP VEETEQDKEH TCETLLMCIV2520
 2521 TVLSHGLRSG GGVGDVLRKP SKEEPLFAAR VIYDLLFFFM VIIIVLNLIF GVIIDTFADL2580
 2581 RSEKQKKEEI LKTTCFICGL ERDKFDNKTV TFEEHIKEEH NMWHYLCFIV LVKVKDSTEY2640
 2641 TGPESYVAEM IRERNLDWFP RMRAMSLVSS DSEGEQNELR NLQEKLESTM KLVTNLSGQL2700
 2701 SELKDQMTEQ RKQKQRIGLL GHPPHMNVNP QQPA

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