YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CDIPT_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEENIFLFV PNLIGYARIV FAIISFYFMP CCPFTASSFY LLSGLLDAFD GHAARALNQG  60
   61 TRFGAMLDML TDRCATMCLL VNLALLYPRA TLLFQLSMSL DVASHWLHLH SSVVRGSESH 120
  121 KMIDLSGNPV LRIYYTSRPA LFTLCAGNEL FYCLLYLFNF SEGPLVGSVG LFRMGLWITA 180
  181 PIALLKSIIS VIHLVTAARN MAALDAADRA KKK

Type	Start	End	Confidence
Cytoplasmic	1	18	0.67
Transmembrane Helix	19	42	0.82
Non-Cytoplasmic	43	68	0.71
Transmembrane Helix	69	88	0.59
Cytoplasmic	89	139	0.75
Transmembrane Helix	140	158	0.86
Non-Cytoplasmic	159	175	0.77
Transmembrane Helix	176	197	0.87
Cytoplasmic	198	213	0.89