YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NCKX3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	89	0.58
Transmembrane Helix	90	109	0.83
Non-Cytoplasmic	110	162	0.50
Transmembrane Helix	163	184	0.90
Cytoplasmic	185	192	0.58
Transmembrane Helix	193	213	0.74
Non-Cytoplasmic	214	218	0.79
Transmembrane Helix	219	241	0.85
Cytoplasmic	242	458	0.96
Transmembrane Helix	459	484	0.80
Non-Cytoplasmic	485	491	0.68
Transmembrane Helix	492	514	0.87
Cytoplasmic	515	525	0.77
Transmembrane Helix	526	544	0.89
Non-Cytoplasmic	545	560	0.81
Transmembrane Helix	561	582	0.93
Cytoplasmic	583	590	0.88
Transmembrane Helix	591	614	0.85
Non-Cytoplasmic	615	624	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDLLLSQLCF LASVALLLWS LSSLREQKEL DLMDLIGEDR KWMVGRKLMQ VNDTLTSEDA  60
   61 GLRSSKNCTE PALHEFPRDI FSNEDRRQGA VVLHVLCAMY MFYALAIVCD DFFVPSLEKI 120
  121 CERLHLSEDV AGATFMAAGS SAPELFTSVI GVFITKGDVG VGTIVGSAVF NILCIIGVCG 180
  181 LFAGQVVALS SWCLLRDSIY YTLSVVALIV FIYDEKVSWW ESLVLVLMYL IYIIIMKYNA 240
  241 CIHQCFERRT KGAGNMVNGL ANNAEIDDSS NCDATVVLLK KANFHRKASV IMVDELLSAY 300
  301 PHQLSFSEAG LRIMITSHFP PKTRLSMASR MLINERQRLI NSRAYTNGES EVAIKIPIKH 360
  361 TVENGTGPSS APDRGVNGTR RDDIVAEADN ETENENEDEN NENDEEEDED DDEGPYTPFD 420
  421 PPSGKLETVK WAFTWPLSFV LYFTVPNCNK PHWEKWFMVT FASSTLWIAA FSYMMVWMVT 480
  481 IIGYTLGIPD VIMGITFLAA GTSVPDCMAS LIVARQGMGD MAVSNSIGSN VFDILIGLGL 540
  541 PWALQTLAVD YGSYIRLNSR GLIYSVGLLL ASVFVTVFGV HLNKWQLDKK LGCGCLFLYG 600
  601 VFLCFSIMTE FNVFTFVNLP MCGD