YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149023858, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMWASVDAM WDFPAEKRIF GAVLLFSWTV YLWETFLAQR QRRIYKTTTH VPPELEQIMD  60
   61 SDTFEKSRLY QLDKSTFSFW SGLYSEVEGT FILLFGGIPY LWRLSGRFCS SAGFGPEYEI 120
  121 IQSLVFLLLA TLFSALTGLP WSLYNTFVIE EKHGFNHQTL EFFMKDAIKK FIVTQCILLP 180
  181 VSSLLLYIIK IGGDYFFIYA WLFTLVVSLV LVTIYADYIA PLFDKFTPLP EGKLKQEIEV 240
  241 MAKSIDFPLT KVYVVEGSKR SSHSNAYFYG FFKNKRIVLF DTLLEEYSVP NKDNQEEPGL 300
  301 EPRNEGEGDS EEVKSKVKNK KQGCKNEEVL AVLGHELGHW KLGHTVKNII ISQMNSFLCF 360
  361 FLFAVLIGRR ELFAAFGFYD SQPTLIGLLI IFQFIFSPYN EVLSFCLTVL SRRFEFQADA 420
  421 FAKKLGKAKD LYSALIKLNK DNLGFPVSDW LFSTWHYSHP PLLERLQALK NAKRD

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.90
Transmembrane Helix	18	37	0.89
Cytoplasmic	38	76	0.95
Transmembrane Helix	77	101	0.81
Non-Cytoplasmic	102	119	0.90
Transmembrane Helix	120	144	0.85
Cytoplasmic	145	170	0.88
Transmembrane Helix	171	189	0.97
Non-Cytoplasmic	190	196	0.77
Transmembrane Helix	197	219	0.91
Cytoplasmic	220	348	0.97
Transmembrane Helix	349	368	0.90
Non-Cytoplasmic	369	384	0.77
Transmembrane Helix	385	407	0.80
Cytoplasmic	408	475	0.92