YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EMP1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVLLAGLFV VHIATAIMLF VSTIANVWMV ADGIDSSIGL WKNCTSGSCD GSLSYGNDDA  60
   61 IKAVQAFMIL SIIFSIISLV VFVFQLFTME KGNRFFLSGS TMLVCWLCIL IGVSIYTHHY 120
  121 AHSEGNFFPS SHQGYCFILT WICFCFSFII GILYMVLRKK

Type	Start	End	Confidence
Cytoplasmic	1	7	0.92
Transmembrane Helix	8	31	0.91
Non-Cytoplasmic	32	62	0.98
Transmembrane Helix	63	87	0.88
Cytoplasmic	88	94	0.91
Transmembrane Helix	95	118	0.89
Non-Cytoplasmic	119	136	0.86
Transmembrane Helix	137	157	0.96
Cytoplasmic	158	160	0.95