YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109509612, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTVRIAVVG AGVIGLSTAA CVSQLVPRCS VTVISDRFTP DTTSNVAAGM LIPPTYPDTP  60
   61 VPTLKRWFRE TFQHLSEIAR SAEAVDAGIH LVSGWQIFRS VPTEEVPFWA DVVLGFREMT 120
  121 EAELKRFPQY EFGQAFTTLK CETSAYLPWL EKRIKGSGGL LLTRRIEDLW ELQPSFDIVV 180
  181 NCSGLGSRRL VGDATVSPVR GQVLQAQAPW VKHFIRDGGG LTYVYPGTSY VTLGGSRQTG 240
  241 DWNLSPDAEL SREIFSRCCA LEPSLHRACD IKEKVGLRPS RPGVRLQKEI LVRGEQRLPV 300
  301 VHNYGHGSGG ISVHWGSALE ATRLVMECVH TLRTPASLSK L

Type	Start	End	Confidence
Signal Peptide	1	23	0.87
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	341	0.99