YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12055544, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFPEEESLQ PLTQRWPRTS KFLLSGCAAT VAELATFPLD LTKTRLQMQG EAALAKLGDG  60
   61 AMESAPYRGM MRTALGIVQE EGFLKLWQGV TPAIYRHVVY SGGRMVTYEH LREVVFGKSE 120
  121 DEHYPLWKSV IGGMMAGVIG QFLANPTDLV KVQMQMEGKR RLEGKPLRFR GVHHAFAKIL 180
  181 AEGGIRGLWA GWIPNIQRAA LVNMGDLTTY DTVKHYLVLN TALEDNIATH GLSSLCSGLV 240
  241 ASILGTPADV IKSRIMNQPR DKQGRGLLYK SSTDCVIQAV QGEGFLSLYK GFLPSWLRMV 300
  301 KTGRFCFFLC FLYISLTCTL QVFFILLSDV WPHERPIHLP FKNLYCRGFF FFQPFLRIMF 360
  361 PFLTD

Type	Start	End	Confidence
Cytoplasmic	1	173	0.54
Transmembrane Helix	174	190	0.48
Non-Cytoplasmic	191	226	0.75
Transmembrane Helix	227	248	0.68
Cytoplasmic	249	304	0.87
Transmembrane Helix	305	327	0.93
Non-Cytoplasmic	328	365	0.59