YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S26A5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	97	0.77
Transmembrane Helix	98	122	0.75
Non-Cytoplasmic	123	131	0.42
Transmembrane Helix	132	152	0.86
Cytoplasmic	153	178	0.57
Transmembrane Helix	179	203	0.82
Non-Cytoplasmic	204	208	0.49
Transmembrane Helix	209	231	0.71
Cytoplasmic	232	236	0.44
Transmembrane Helix	237	251	0.27
Non-Cytoplasmic	252	253	0.48
Transmembrane Helix	254	275	0.70
Cytoplasmic	276	289	0.78
Transmembrane Helix	290	309	0.82
Non-Cytoplasmic	310	335	0.75
Transmembrane Helix	336	357	0.88
Cytoplasmic	358	409	0.69
Transmembrane Helix	410	432	0.87
Non-Cytoplasmic	433	437	0.62
Transmembrane Helix	438	458	0.77
Cytoplasmic	459	471	0.69
Transmembrane Helix	472	501	0.81
Non-Cytoplasmic	502	744	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHAEENEIP AETQKYLVER PIFSHPVLQE RLHVKDKVTD SIGDKLKQAF TCTPKKVRNI  60
   61 IYMFLPITKW LPAYKFKEYV LGDLVSGIST GVLQLPQGLA FAMLAAVPPV FGLYSSFYPV 120
  121 IMYCFFGTSR HISIGPFAVI SLMIGGVAVR LVPDDIVIPG GVNATNGTEA RDALRVKVAM 180
  181 SVTLLSGIIQ FCLGVCRFGF VAIYLTEPLV RGFTTAAAVH VFTSMLKYLF GVKTKRYSGI 240
  241 FSVVYSTVAV LQNVKNLNVC SLGVGLMVFG LLLGGKEFNE RFKEKLPAPI PLEFFAVVMG 300
  301 TGISAGFNLH ESYSVDVVGT LPLGLLPPAN PDTSLFHLVY VDAIAIAIVG FSVTISMAKT 360
  361 LANKHGYQVD GNQELIALGI CNSIGSLFQT FSISCSLSRS LVQEGTGGKT QLAGCLASLM 420
  421 ILLVILATGF LFESLPQAVL SAIVIVNLKG MFMQFSDLPF FWRTSKIELT IWLTTFVSSL 480
  481 FLGLDYGLIT AVIIALLTVI YRTQSPSYTV LGQLPDTDVY IDIDAYEEVK EIPGIKIFQI 540
  541 NAPIYYANSD LYSSALKRKT GVNPAIIMGA RRKAMRKYAK EVGNANIANA TVVKVDAEVD 600
  601 GENATKPEEE DDEVKFPPIV IKTTFPEELQ RFLPQGENIH TVILDFTQVN FMDSVGVKTL 660
  661 AGIVKEYGDV GIYVYLAGCS AQVVNDLTSN RFFENPALKE LLFHSIHDAV LGSQVREAMA 720
  721 EQETTVLPPQ EDMEPNATPT TPEA