YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16758262, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACLMAAFSV GTAMNASNYS AAMTEPKSVC VSVDEVVSSN VDELETDLLN GHLKKVDNNF  60
   61 TEAQRFSSLP RRAAVNIEFK DLSYSVPEGP WWRKKGYKTL LKGISGKFNS GELVAIMGPS 120
  121 GAGKSTLMNI LAGYRETGMK GAVLINGMPR DLRCFRKVSC YIMQDDMLLP HLTVQEAMMV 180
  181 SAHLKLQERD EGRREMVKEI LTALGLLPCA NTRTGSLSGG QRKRLAIALE LVNNPPVMFF 240
  241 DEPTSGLDSA SCFQVVSLMK GLAQGGRSIV CTIHQPSAKL FELFDQLYVL SQGQCVYRGK 300
  301 VSNLVPYLRD LGLNCPTYHN PADFVMEVAS GEYGDQNSRL VRAVREGMCD SDYKRELGGD 360
  361 GDVNPFLWHR PAEEDSASME GCHSFSASCL TQFCILFKRT FLSIMRDSVL THLRITSHIG 420
  421 IGLLIGLLYL GIGNEAKKVL SNSGFLFFSM LFLMFAALMP TVLTFPLEMS VFLREHLNYW 480
  481 YSLKAYYLAK TMADVPFQIM FPVAYCSIVY WMTSQPSDAV RFVLFAALGT MTSLVAQSLG 540
  541 LLIGAASTSL QVATFVGPVT AIPVLLFSGF FVSFDTIPTY LQWMSYISYV RYGFEGVILS 600
  601 IYGLDREDLH CDIAETCHFQ KSEAILRELD VENAKLYLDF IVLGIFFISL RLIAYFVLRY 660
  661 KIRAER

Type	Start	End	Confidence
Signal Peptide	1	21	0.76
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	409	0.93
Transmembrane Helix	410	433	0.85
Cytoplasmic	434	443	0.50
Transmembrane Helix	444	467	0.86
Non-Cytoplasmic	468	521	0.44
Transmembrane Helix	522	545	0.89
Cytoplasmic	546	551	0.52
Transmembrane Helix	552	574	0.88
Non-Cytoplasmic	575	635	0.72
Transmembrane Helix	636	658	0.87
Cytoplasmic	659	666	0.78