YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5070231, gi\|1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWLARDSCV AAVILLLTVL SPPVALVRDP TPRFLEQYKS ECYFYNGTQR VRLLVRYIYN  60
   61 REEYTRFDSD VGEFRAVTEL GRRDTEYYNK QKEYIERERA AVDTICRHNY EISDRFLVPR 120
  121 TVEPKVTVYP SKTQPLKHHN LLVCSVSDFY PGSVEVRWFR NGEEEKDGLV STGLIPNGDW 180
  181 TFQLLVMLEM VPQGGEVYTC QVEHPSLTSP VRVEWKAQST SAQNKKMSGV GGIVLGLLFL 240
  241 GAGLFVYFRN QKGQSGLQPT GLLN

Type	Start	End	Confidence
Signal Peptide	1	26	0.97
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	226	0.99
Transmembrane Helix	227	248	0.91
Cytoplasmic	249	264	0.93