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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CO1A2_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSFVDTRTL LLLAVTSCLA TCQSLQMGSV RKGPTGDRGP RGQRGPAGPR GRDGVDGPVG  60
   61 PPGPPGAPGP PGPPGPPGLT GNFAAQYSDK GVSAGPGPMG LMGPRGPPGA VGAPGPQGFQ 120
  121 GPAGEPGEPG QTGPAGSRGP AGPPGKAGED GHPGKPGRPG ERGVVGPQGA RGFPGTPGLP 180
  181 GFKGIRGHNG LDGLKGQPGA QGVKGEPGAP GENGTPGQAG ARGLPGERGR VGAPGPAGAR 240
  241 GSDGSVGPVG PAGPIGSAGP PGFPGAPGPK GELGPVGNPG PAGPAGPRGE AGLPGLSGPV 300
  301 GPPGNPGANG LTGAKGATGL PGVAGAPGLP GPRGIPGPVG AAGATGPRGL VGEPGPAGSK 360
  361 GETGNKGEPG SAGAQGPPGP SGEEGKRGSP GEPGSAGPAG PPGLRGSPGS RGLPGADGRA 420
  421 GVMGPPGNRG STGPAGVRGP NGDAGRPGEP GLMGPRGLPG SPGNVGPAGK EGPVGLPGID 480
  481 GRPGPIGPAG PRGEAGNIGF PGPKGPSGDP GKPGEKGHPG LAGARGAPGP DGNNGAQGPP 540
  541 GPQGVQGGKG EQGPAGPPGF QGLPGPSGTA GEVGKPGERG LPGEFGLPGP AGPRGERGPP 600
  601 GESGAAGPSG PIGIRGPSGA PGPDGNKGEA GAVGAPGSAG ASGPGGLPGE RGAAGIPGGK 660
  661 GEKGETGLRG EIGNPGRDGA RGAPGAIGAP GPAGASGDRG EAGAAGPSGP AGPRGSPGER 720
  721 GEVGPAGPNG FAGPAGSAGQ PGAKGEKGTK GPKGENGIVG PTGPVGAAGP SGPNGPPGPA 780
  781 GSRGDGGPPG MTGFPGAAGR TGPPGPSGIT GPPGPPGAAG KEGIRGPRGD QGPVGRTGEI 840
  841 GASGPPGFAG EKGPSGEPGT TGPPGTAGPQ GLLGAPGILG LPGSRGERGQ PGIAGALGEP 900
  901 GPLGIAGPPG ARGPPGAVGS PGVNGAPGEA GRDGNPGSDG PPGRDGQPGH KGERGYPGNI 960
  961 GPTGAAGAPG PHGSVGPAGK HGNRGEPGPA GSVGPVGAVG PRGPSGPQGI RGDKGEPGDK1020
 1021 GARGLPGLKG HNGLQGLPGL AGLHGDQGAP GPVGPAGPRG PAGPSGPIGK DGRSGHPGPV1080
 1081 GPAGVRGSQG SQGPAGPPGP PGPPGPPGVS GGGYDFGFEG GFYRADQPRS QPSLRPKDYE1140
 1141 VDATLKSLNN QIETLLTPEG SRKNPARTCR DLRLSHPEWK SDYYWIDPNQ GCTMDAIKVY1200
 1201 CDFSTGETCI QAQPVNTPAK NAYSRAQANK HVWLGETING GSQFEYNAEG VSSKEMATQL1260
 1261 AFMRLLANRA SQNITYHCKN SIAYLDEETG RLNKAVILQG SNDVELVAEG NSRFTYTVLV1320
 1321 DGCSKKTNEW DKTVIEYKTN KPSRLPFLDI APLDIGGTNQ EFRVEVGPVC FK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle