YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXA3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWSFLGRL LENAQEHSTV IGKVWLTVLF IFRILVLGAA AEEVWGDEQS DFTCNTQQPG  60
   61 CENVCYDRAF PISHIRFWAL QIIFVSTPTL IYLGHVLHIV RMEEKKKERE EELLRRDNPQ 120
  121 HGRGREPMRT GSPRDPPLRD DRGKVRIAGA LLRTYVFNII FKTLFEVGFI AGQYFLYGFQ 180
  181 LQPLYRCDRW PCPNTVDCFI SRPTEKTIFV IFMLAVACAS LVLNMLEIYH LGWKKLKQGV 240
  241 TNHFNPDASE VRHKPLDPLS EAANSGPPSV SIGLPPYYTH PACPTVQGKA TGFPGAPLLP 300
  301 ADFTVVTLND AQGRGHPVKH CNGHHLTTEQ NWASLGAEPQ TPASKPSSAA SSPHGRKGLT 360
  361 DSSGSSLEES ALVVTPEGEQ ALATTVEMHS PPLVLLDPER SSKSSSGRAR PGDLAI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	41	0.93
Non-Cytoplasmic	42	76	0.98
Transmembrane Helix	77	99	0.92
Cytoplasmic	100	153	0.97
Transmembrane Helix	154	175	0.83
Non-Cytoplasmic	176	207	0.90
Transmembrane Helix	208	229	0.90
Cytoplasmic	230	416	0.92