YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	THG1_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWAFSTARIG SPLAATSVTL RRCLRLGVAM AKSKFEYVRD FEVDDTCLPH CWVVVRLDGR  60
   61 NFHRFAEKHN FAKPNDSRAL HLMTKCAQTV MQELEDIVIA YGQSDEYSFV FRKRSNWFKR 120
  121 RASKFMTLVA SQFASSYVFY WRDYFEDQPL LYPPGFDGRV VLYPSNQTLK DYLSWRQADC 180
  181 HINNLYNTVF WALIQQSGLT PVQAQQRLKG TLTADKNEIL FSEFHINYNN EPHMYRKGTV 240
  241 LVWQKVNEVR TQEIRLPAEM EGEKMAVTRT RTKLVALNCD LIGDAFWKEH PEILEGED

Type	Start	End	Confidence
Signal Peptide	1	23	0.37
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	298	0.85