YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CD48_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYFKKRRWFL ILESLLLSLV TGFQDQSVPN VNAITGSNVT LTILKHPLAS YQRLTWLHTT  60
   61 NQKILEYFPN GKKTVFESVF KDRVDLDKTN GALRIYNVSK EDRGDYYMRM LHETEDQWKI 120
  121 TMEVYDLVSK PAIKIEKTKN LTDSCHLRLS CKVEDQGVDY TWYEDSGPFP QRNPGYVLEI 180
  181 TITPHNKSTF YTCQVSNPVS SENDTLYFIP PCTLARSSGV HWIAAWLVVT LSIIPSILLA 240
  241

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	218	0.97
Transmembrane Helix	219	239	0.74
Cytoplasmic	240	240	0.77