YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STIMA_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGPGGNVSR GLPGGPASTV ASGAGRCESG ALMHSFGIFL QGLLGVVAFS TLMLKRFREP  60
   61 KHERRPWRIW FLDTSKQAIG MLFIHFANVY LADLTEEDPC SLYLINFLLD ATVGMLLIYV 120
  121 GVRAVGVLVE WQQWESLRFG EYGDPLQCGA WVGQCALYIV IMIFEKSVVF IVLLILQWKK 180
  181 VALLNPIENP DLKLAIVMLI VPFFVNAFMF WVVDNFLMRK GKTKAKLEER GANQDSRNGS 240
  241 KVRYRRAASH EESESEILIS ADDEMEESDA EEDLRRPVKK KHRFGLPV

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.85
Transmembrane Helix	32	54	0.88
Cytoplasmic	55	68	0.91
Transmembrane Helix	69	92	0.78
Non-Cytoplasmic	93	106	0.76
Transmembrane Helix	107	127	0.86
Cytoplasmic	128	154	0.77
Transmembrane Helix	155	176	0.82
Non-Cytoplasmic	177	193	0.88
Transmembrane Helix	194	213	0.96
Cytoplasmic	214	288	0.94