YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	K1C27_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVRFSSASR RLGSVRLSSP GAALGAGNTC GVPGIGSGFS CAFGGSSLAG GLGMGGASCG  60
   61 AFTVNEHGLL SGNEKVTMQN LNDRLASYLE NVQALEEANA DLEQKIKDWY EKFGPGSCRG 120
  121 LDHDYSRYFP IIDDLRTQII SATAQNANIV LQNDNARLTA DDFRMKYENE LALHQSVDAD 180
  181 INGLRRVLDE LTLCRTDLEV QLETLSEELA YLKKNHEEEM QALQCAAGGN VNVEMNAAPG 240
  241 VDLTVLLNNM RAEYEALAEQ NRRDAEAWFQ EKSASLQQQI SDDAGATTSA RNELTEMKRT 300
  301 LQTLEIELQS LLAMKHSLEC SLTETEGNYC TQLAQIQAQI SALEEQLHQV RTETEGQKLE 360
  361 YEQLLNVKAH LEKEIETYCL LIGGDEGSCV KSKGQGGPGN QTKDSPKTAI VKTVVEELDP 420
  421 RGKVLSSRVH TLEEKSTKVN NKNEQRIPS

Type	Start	End	Confidence
Signal Peptide	1	25	0.73
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	449	0.86