YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149037097, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	79	0.74
Transmembrane Helix	80	100	0.90
Cytoplasmic	101	108	0.85
Transmembrane Helix	109	131	0.86
Non-Cytoplasmic	132	138	0.85
Transmembrane Helix	139	162	0.85
Cytoplasmic	163	174	0.85
Transmembrane Helix	175	197	0.92
Non-Cytoplasmic	198	206	0.81
Transmembrane Helix	207	228	0.94
Cytoplasmic	229	283	0.98
Transmembrane Helix	284	307	0.87
Non-Cytoplasmic	308	321	0.88
Transmembrane Helix	322	343	0.92
Cytoplasmic	344	350	0.82
Transmembrane Helix	351	370	0.94
Non-Cytoplasmic	371	375	0.89
Transmembrane Helix	376	397	0.90
Cytoplasmic	398	405	0.92
Transmembrane Helix	406	428	0.87
Non-Cytoplasmic	429	438	0.84
Transmembrane Helix	439	462	0.89
Cytoplasmic	463	480	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPGFTCPWS GSLSGFRVRT WIEPVVASTQ VAGSLYDTGL LLVLKESFAS DARDSSNYSA  60
   61 NQSLGERQED QQQKAISNFY IIYNLVVGLT PLLSAYVLGW LSDRYHRKIS ICTAMLGFLL 120
  121 SRIGLLLKVM LDWPLEVMYG AAALNGLCGG FSAYWSGVMA LGSLSCSQSR RSVRLILIDL 180
  181 VLGLAGFCGS MASGHLFKQI VGHSAQGLLL TACSVGCAAF ALFYSLFVLK VPEAVSKPNK 240
  241 VHPTVDTVSG MMGTYRTLDP DQQDKPNIQA NPPTPGKEKP SQAIIALLFV GAIVYDLAVV 300
  301 GTLDVMALFV LKDPLHWNQV QLGYGMASGY IIFITSFLGV LVFSRYFRDT TMIIIGMVSF 360
  361 GSGALLLAFV KKTYMFYIAR AVMLFALIPI TTIRSAMSKL VKDSSYGKIF VILQLCLALT 420
  421 GVVTSTMYNK IYQLTLNKFA GTCFLLSSFL SFLAIVPIGV VAYKQVPGSR QGECADTQRS 480
  481