YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACHE_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMALLGTLL LLALFGRSQG KNEELSLYHH LFDNYDPECR PVRRPEDTVT ITLKVTLTNL  60
   61 ISLNEKEETL TTSVWIGIEW QDYRLNFSKD DFAGVEILRV PSEHVWLPEI VLENNIDGQF 120
  121 GVAYDCNVLV YEGGSVSWLP PAIYRSTCAV EVTYFPFDWQ NCSLIFRSQT YNAEEVELIF 180
  181 AVDDDGNAIN KIDIDTAAFT ENGEWAIDYC PGMIRHYEGG STEDPGETDV IYTLIIRRKP 240
  241 LFYVINIIVP CVLISGLVLL AYFLPAQAGG QKCTVSINVL LAQTVFLFLI AQKIPETSLS 300
  301 VPLLGRYLIF VMVVATLIVM NCVIVLNVSL RTPTTHATSP RLRQILLELL PRLLGLSPPP 360
  361 EDPGAASPAR RASSVGILLR AEELILKKPR SELVFEGQRH RHGTWTAAAL CQNLGAAAPE 420
  421 VRCCVDAVNF VAESTRDQEA TGEELSDWVR MGKALDNVCF WAALVLFSVG STLIFLGGYF 480
  481 NQVPDLPYPP CIQP

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	241	0.99
Transmembrane Helix	242	264	0.94
Cytoplasmic	265	272	0.89
Transmembrane Helix	273	294	0.89
Non-Cytoplasmic	295	306	0.84
Transmembrane Helix	307	328	0.92
Cytoplasmic	329	457	0.99
Transmembrane Helix	458	480	0.93
Non-Cytoplasmic	481	494	0.98