YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LSHR_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	367	0.99
Transmembrane Helix	368	390	0.91
Cytoplasmic	391	399	0.88
Transmembrane Helix	400	422	0.90
Non-Cytoplasmic	423	442	0.90
Transmembrane Helix	443	466	0.86
Cytoplasmic	467	486	0.92
Transmembrane Helix	487	509	0.88
Non-Cytoplasmic	510	529	0.94
Transmembrane Helix	530	554	0.90
Cytoplasmic	555	575	0.93
Transmembrane Helix	576	598	0.91
Non-Cytoplasmic	599	609	0.86
Transmembrane Helix	610	631	0.75
Cytoplasmic	632	700	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRVPALRQ LLVLAVLLLK PSQLQSRELS GSRCPEPCDC APDGALRCPG PRAGLARLSL  60
   61 TYLPVKVIPS QAFRGLNEVV KIEISQSDSL ERIEANAFDN LLNLSELLIQ NTKNLLYIEP 120
  121 GAFTNLPRLK YLSICNTGIR TLPDVTKISS SEFNFILEIC DNLHITTIPG NAFQGMNNES 180
  181 VTLKLYGNGF EEVQSHAFNG TTLISLELKE NIYLEKMHSG AFQGATGPSI LDISSTKLQA 240
  241 LPSHGLESIQ TLIALSSYSL KTLPSKEKFT SLLVATLTYP SHCCAFRNLP KKEQNFSFSI 300
  301 FENFSKQCES TVRKADNETL YSAIFEENEL SGWDYDYGFC SPKTLQCAPE PDAFNPCEDI 360
  361 MGYAFLRVLI WLINILAIFG NLTVLFVLLT SRYKLTVPRF LMCNLSFADF CMGLYLLLIA 420
  421 SVDSQTKGQY YNHAIDWQTG SGCGAAGFFT VFASELSVYT LTVITLERWH TITYAVQLDQ 480
  481 KLRLRHAIPI MLGGWLFSTL IATMPLVGIS NYMKVSICLP MDVESTLSQV YILSILILNV 540
  541 VAFVVICACY IRIYFAVQNP ELTAPNKDTK IAKKMAILIF TDFTCMAPIS FFAISAAFKV 600
  601 PLITVTNSKI LLVLFYPVNS CANPFLYAIF TKAFQRDFLL LLSRFGCCKR RAELYRRKEF 660
  661 SAYTSNCKNG FPGASKPSQA TLKLSTVHCQ QPIPPRALTH