YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ITM2C_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKISFQPAV AGVKAEKADK AAASGPASAS APAAEILLTP AREERPPRHR SRKGGSVGGV  60
   61 CYLSMGMVVL LMGLVFASVY IYRYFFLAQL ARDNFFHCGV LYEDSLSSQI RTRLELEEDV 120
  121 KIYLEENYER INVPVPQFGG GDPADIIHDF QRGLTAYHDI SLDKCYVIEL NTTIVLPPRN 180
  181 FWELLMNVKR GTYLPQTYII QEEMVVTEHV RDKEALGSFI YHLCNGKDTY RLRRRATRRR 240
  241 INKRGAKNCN AIRHFENTFV VETLICGVV

Type	Start	End	Confidence
Cytoplasmic	1	57	0.93
Transmembrane Helix	58	82	0.90
Non-Cytoplasmic	83	269	0.96