YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157817159, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.72
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTLPVQTL RLFLILLAVL APGAADFNIS SLSGLLSPAL TESLLIALPP CHLTGGNATL  60
   61 MVRRANDSKV VKSGFVVPPC RGRRELVSVV DSGAGFTVTR LSAYQVTNLT PGTKYYISYR 120
  121 VQKGMSTESS PETPMSTLPR RNMESIRLGM ARTGGMVVIT VLLSVAMFLL VVGLIIALAL 180
  181 GAHK

Type	Start	End	Confidence
Signal Peptide	1	25	0.72
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	153	0.66
Transmembrane Helix	154	180	0.89
Cytoplasmic	181	184	0.53