YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149063229, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGARASQEPW ARVLVGLRVL LSVLLLTLLL LSLVAPGAQG ARGRGTADKN SHRRATSSFS  60
   61 QSVSSLFGED NVRAAQKLLS RLTERFVQGV DMFLETLWKI WMELLEVLGL DVSNLSQYFS 120
  121 PASVSNSPTR ALVLVGVVLL AYWFLSLTLG FTFSLLHLVF GRFFWLVRVI LFSMSCVYIL 180
  181 HKYEGEPEHA VLPLCIVVAI YFMTGPMGYW RGSAGGLCSP SVEEKLEHLE NQVRLLNIRL 240
  241 NRVLENLDRS NEK

Type	Start	End	Confidence
Signal Peptide	1	40	0.99
N-region	1	31
H-region	32	37
C-region	38	40
Cleavage Site	40	41
Non-Cytoplasmic	41	130	0.99
Transmembrane Helix	131	153	0.91
Cytoplasmic	154	163	0.71
Transmembrane Helix	164	181	0.97
Non-Cytoplasmic	182	188	0.84
Transmembrane Helix	189	210	0.92
Cytoplasmic	211	253	0.97