YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|124481794
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDKERCESAR LLLCSAVWNL SVTMKMMKVV MKMMMMVVVL LPVLCGAARS CAESRRVYAE  60
   61 NHGSIPAPQT LISGEHLRFC PRDYTCCSSH MEDTLTQHSQ QHFLSAVRDS SHFLFSSFSH 120
  121 THRRFDELFR KLIDVSEESM SEMFTHTYGR RYTQNAHIIT QLFTDLRRYY TGGRVSLAEV 180
  181 LDDFWAGLLE CVFSLLNPQY ELSDDYLECV RKHSEQLLPF GDRPLKLHTQ VSRAFTAARA 240
  241 LVQALAAGRE IVSKATQLRA GPECVRALMR QWFCPLCRGL PSLKPCHSLC LNIMKGCLAN 300
  301 QADLNSEWNS FIDALTVVVE KLGGPFNFEL AADAIAVTVS EGIMNMQENS ISISAKVFQG 360
  361 CGIPRPVPGR NKRSAAERDA KPKFRSFRTE EKPSSGSGTD LDQLVQHYTI HTHYYTHTLT 420
  421 QVTCARCAGA GAAGASEADA GLLVGPPTHH LQ

Type	Start	End	Confidence
Cytoplasmic	1	28	0.81
Transmembrane Helix	29	48	0.81
Non-Cytoplasmic	49	452	0.93