YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1296989, gi\|6...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.67
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHEQKSGGL LRLLRLLWLL PHSWAVLEAS PQAWWDESQN HTFRHTLFCQ DGFPNIGLSE  60
   61 TYDEDALFSF DFSQNTRVPR LPEFAEWAQE QGDASAIAFD KGFCDMLMQN VSPRLEGQIP 120
  121 VSRGLPSAEV FTLKPLEFGK PNTLVCFISN LFPPTLTVTW QHHFVPVEGA SPTSVSAIDG 180
  181 LTFQAFSYLN FTPEPFDLYS CTVTHEIDRY TAIAYWVPQN ALPSDLLENV LCGVAFGLGV 240
  241 LGLVVGIVFF IRSQRPCSGD

Type	Start	End	Confidence
Signal Peptide	1	25	0.69
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	229	0.91
Transmembrane Helix	230	251	0.92
Cytoplasmic	252	260	0.88