YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109501111, gi...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQPPPPPK PWETRRIPGA GPGPGPGPTF QSADLGPTLL TRPGQPTLTR VPPPILPRPS  60
   61 QQTGGNNVNT FRPAYSSFSS GYGAYGNAFY GSYSPYSYGY NGLGFNRLRV DDLPPSRFVQ 120
  121 QAEESSRGAF QSIESIVHAF ASVSMMMDAT FSAVYNSFRA VLDVANHFSR LKIHFTKVFS 180
  181 AFALVRTIRY LYRRLQWMMG LRRGSENEDL WAESEGTVAC LGAEDQANNS AKSWPIFLFF 240
  241 AVILGGPYLI WKLLSTHSDE VTDSTNWANG EDDHVVARAE YDFAAVSDEE ISFRAGDMLN 300
  301 LALKEQQPKV RGWLLASLDG QTTGLIPANY VKILGKRRGR KTVESSTMPK QQQSFTNPTS 360
  361 VKGVTTTNSL EEQEAAFESV FVETNKVAGT PDSTGKNGDK QDL

Type	Start	End	Confidence
Cytoplasmic	1	135	0.74
Transmembrane Helix	136	155	0.68
Non-Cytoplasmic	156	172	0.72
Transmembrane Helix	173	192	0.70
Cytoplasmic	193	233	0.72
Transmembrane Helix	234	251	0.82
Non-Cytoplasmic	252	403	0.76