YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47577951, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESKNQTDVS GFILMGITDD KALKPFIFSM FTSMYLLTIL GNLLIILIVS TESNLQTPMY  60
   61 IFLSNLSFND ICLSTTIIPK TLVNIHAEEQ SITYTGCLTQ ICFTLLFCSF ESCLLSAMAY 120
  121 DRYVAICHPL NYMVIMSSQT CGQLILLSLI ISLVNSGLLG LMMLRLSFCT NVEIPLFFCE 180
  181 LAQVIKLACS DTLVNYILIY LATIILNGIP ISGIIFSYTQ IASSVFRMVS VKGKYKAIST 240
  241 CGSHISMVSL FYGTALGVYI SSAVTTSVTN TAFAYVMCTL VPQMLNPFIY SLRNRDMEVA 300
  301 LRKHISRVVC LL

Type	Start	End	Confidence
Cytoplasmic	1	26	0.86
Transmembrane Helix	27	50	0.86
Non-Cytoplasmic	51	95	0.54
Transmembrane Helix	96	120	0.71
Cytoplasmic	121	139	0.48
Transmembrane Helix	140	164	0.78
Non-Cytoplasmic	165	196	0.64
Transmembrane Helix	197	219	0.90
Cytoplasmic	220	239	0.80
Transmembrane Helix	240	260	0.88
Non-Cytoplasmic	261	270	0.71
Transmembrane Helix	271	292	0.85
Cytoplasmic	293	312	0.93