YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXA5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWSFLGEF LEEVHKHSTV IGKVWLTVLF IFRMLVLGTA AESSWGDEQA DFRCDTIQPG  60
   61 CQNVCYDQAF PISHIRYWVL QIIFVSTPSL VYMGHAMHTV RMQEKQKLRE AEKAKEAGGT 120
  121 GTYEYLAEKA ELSCWKEVNG KIVLQGTLLN TYVCTILIRT AMEVAFMVGQ YLLYGIFLDT 180
  181 LHVCRRSPCP HPVNCYVSRP TEKNVFIVFM MAVAGLSLFL SLAELYHLGW KKIRQRLAKS 240
  241 RQGDKHQLLG PSTSLVQGLT PPPDFNQCLK NSPDEKFFSD FSNNMGSRKN PDPLATEEVP 300
  301 NQEQIPEEGF IHTQYGQKPE QPSGASAGHR FPQGYHSDKR RLSKASSKAR SDDLSV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	41	0.89
Non-Cytoplasmic	42	76	0.95
Transmembrane Helix	77	99	0.87
Cytoplasmic	100	147	0.96
Transmembrane Helix	148	173	0.67
Non-Cytoplasmic	174	205	0.86
Transmembrane Helix	206	229	0.91
Cytoplasmic	230	356	0.90