YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5HT2C_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNLGNAVRS LLMHLIGLLV WQFDISISPV AAIVTDTFNS SDGGRLFQFP DGVQNWPALS  60
   61 IVVIIIMTIG GNILVIMAVS MEKKLHNATN YFLMSLAIAD MLVGLLVMPL SLLAILYDYV 120
  121 WPLPRYLCPV WISLDVLFST ASIMHLCAIS LDRYVAIRNP IEHSRFNSRT KAIMKIAIVW 180
  181 AISIGVSVPI PVIGLRDESK VFVNNTTCVL NDPNFVLIGS FVAFFIPLTI MVITYFLTIY 240
  241 VLRRQTLMLL RGHTEEELAN MSLNFLNCCC KKNGGEEENA PNPNPDQKPR RKKKEKRPRG 300
  301 TMQAINNEKK ASKVLGIVFF VFLIMWCPFF ITNILSVLCG KACNQKLMEK LLNVFVWIGY 360
  361 VCSGINPLVY TLFNKIYRRA FSKYLRCDYK PDKKPPVRQI PRVAATALSG RELNVNIYRH 420
  421 TNERVARKAN DPEPGIEMQV ENLELPVNPS NVVSERISSV

Type	Start	End	Confidence
Cytoplasmic	1	10	0.95
Transmembrane Helix	11	34	0.86
Non-Cytoplasmic	35	55	0.93
Transmembrane Helix	56	79	0.91
Cytoplasmic	80	90	0.90
Transmembrane Helix	91	116	0.85
Non-Cytoplasmic	117	130	0.86
Transmembrane Helix	131	155	0.83
Cytoplasmic	156	171	0.96
Transmembrane Helix	172	195	0.87
Non-Cytoplasmic	196	219	0.90
Transmembrane Helix	220	241	0.93
Cytoplasmic	242	313	0.98
Transmembrane Helix	314	335	0.90
Non-Cytoplasmic	336	353	0.86
Transmembrane Helix	354	373	0.93
Cytoplasmic	374	460	0.97