YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23510301, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.94
Transmembrane Helix	54	74	0.90
Non-Cytoplasmic	75	108	0.90
Transmembrane Helix	109	129	0.79
Cytoplasmic	130	140	0.85
Transmembrane Helix	141	164	0.86
Non-Cytoplasmic	165	191	0.72
Transmembrane Helix	192	213	0.82
Cytoplasmic	214	224	0.78
Transmembrane Helix	225	251	0.84
Non-Cytoplasmic	252	278	0.59
Transmembrane Helix	279	305	0.81
Cytoplasmic	306	473	0.78
Transmembrane Helix	474	492	0.79
Non-Cytoplasmic	493	596	0.96
Transmembrane Helix	597	619	0.90
Cytoplasmic	620	634	0.88
Transmembrane Helix	635	654	0.88
Non-Cytoplasmic	655	663	0.68
Transmembrane Helix	664	685	0.86
Cytoplasmic	686	700	0.82
Transmembrane Helix	701	721	0.91
Non-Cytoplasmic	722	750	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPAIGGGLA GSELRPRRGR CVPQAARAVS RDVVPQAAAR KLKRPAWSSR RFQAAGWWAT  60
   61 LAVVTLLSFA TRFHRLDQPA HICWDETHFG KMGSYYINRT FFFDVHPPLG KMLIGLAGYL 120
  121 SGYDGTFLFQ KPGDRYEHHS YMGMRGFCAF LGSWLIPFAY LTVLDLSKSF PAALLTAALL 180
  181 TFDTGCLTLS QYILLDPILM FFIMAAMLSM VKYNSCANRP FSAPWWFWLS LTGISLAGAL 240
  241 GVKFVGLFII VQVGLNTISD LWHLFGDLSL SLVTVGKHLT ARILCLIVLP LVLYVTIFAV 300
  301 HVMVLNKSGP GDGFFSSAFQ ARLSGNSLHN ASIPEHLAYG SVITVKNLRM AIGYLHSHRH 360
  361 LYPEGIGARQ QQVTTYLHKD YNNLWIIKKY NANTDPLDPS FPVEFVRHGD IIRLEHKETT 420
  421 RNLHSHYHEA PLTRKHYQVT GYGINGTGDS NDFWRIEVVN RKFGNRIKVL RSRIRLIHLV 480
  481 TGCVLGSSGK ILPKWGWEQL EVTCTPYLKE TTNSIWNIEE HINPKLPNIS LDVLQPSFPE 540
  541 ILLESHMVMI RGNNGLKPKD NEFTSKPWHW PINYQGLRFS GANDTDFRVY LLGNPVVWWL 600
  601 NLVSIVLYLL SGSTIAVAMQ RGIQLPAELQ GLTKVLLRGG GQLLLGWMLH YFPFFLMGRI 660
  661 LYFHHYFPAM LFSSMLTGIL WDTLLRLCAW GLAPSPLGRR IHAVGILSLL LTTAYSFYLF 720
  721 HPLAYGMVGP LAQEPESPMA GLRWLESWDF