YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POMT2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	123	0.77
Transmembrane Helix	124	144	0.90
Non-Cytoplasmic	145	178	0.74
Transmembrane Helix	179	199	0.71
Cytoplasmic	200	210	0.78
Transmembrane Helix	211	234	0.86
Non-Cytoplasmic	235	261	0.67
Transmembrane Helix	262	283	0.82
Cytoplasmic	284	294	0.77
Transmembrane Helix	295	321	0.84
Non-Cytoplasmic	322	348	0.59
Transmembrane Helix	349	375	0.81
Cytoplasmic	376	543	0.79
Transmembrane Helix	544	562	0.79
Non-Cytoplasmic	563	666	0.96
Transmembrane Helix	667	689	0.90
Cytoplasmic	690	704	0.88
Transmembrane Helix	705	724	0.88
Non-Cytoplasmic	725	733	0.68
Transmembrane Helix	734	755	0.86
Cytoplasmic	756	770	0.82
Transmembrane Helix	771	791	0.91
Non-Cytoplasmic	792	820	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYASGRLLA ARAATTLSAP PRARGPALRG KRRELQIPWH LETPSYDPLT GQRTRPGVPP  60
   61 ARRVILRKGR MPPAIGGGLA GSELRPRRGR CVPQAARAVS RDVVPQAAAR KLKRPAWSSR 120
  121 RFQAAGWWAT LAVVTLLSFA TRFHRLDQPA HICWDETHFG KMGSYYINRT FFFDVHPPLG 180
  181 KMLIGLAGYL SGYDGTFLFQ KPGDRYEHHS YMGMRGFCAF LGSWLIPFAY LTVLDLSKSF 240
  241 PAALLTAALL TFDTGCLTLS QYILLDPILM FFIMAAMLSM VKYNSCANRP FSAPWWFWLS 300
  301 LTGISLAGAL GVKFVGLFII VQVGLNTISD LWHLFGDLSL SLVTVGKHLT ARILCLIVLP 360
  361 LVLYVTIFAV HVMVLNKSGP GDGFFSSAFQ ARLSGNSLHN ASIPEHLAYG SVITVKNLRM 420
  421 AIGYLHSHRH LYPEGIGARQ QQVTTYLHKD YNNLWIIKKY NANTDPLDPS FPVEFVRHGD 480
  481 IIRLEHKETT RNLHSHYHEA PLTRKHYQVT GYGINGTGDS NDFWRIEVVN RKFGNRIKVL 540
  541 RSRIRLIHLV TGCVLGSSGK ILPKWGWEQL EVTCTPYLKE TTNSIWNIEE HINPKLPNIS 600
  601 LDVLQPSFPE ILLESHMVMI RGNNGLKPKD NEFTSKPWHW PINYQGLRFS GANDTDFRVY 660
  661 LLGNPVVWWL NLVSIVLYLL SGSTIAVAMQ RGIQLPAELQ GLTKVLLRGG GQLLLGWMLH 720
  721 YFPFFLMGRI LYFHHYFPAM LFSSMLTGIL WDTLLRLCAW GLAPSPLGRR IHAVGILSLL 780
  781 LTTAYSFYLF HPLAYGMVGP LAQEPESPMA GLRWLESWDF