YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12848562
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQQRQGAE RDLYRDTWVR YLGYANEVGE AFRSLVPAAV VWLSYGVSSS YVLADAIDKG  60
   61 KKAGEVPSPE AGRNTRMALA VVDTFVWQSL ASVAIPGFTI NRLCAASLYV LGTMTHWPPT 120
  121 VRKWTTTTLG LLAIPVIIHP IDRSVDFLLD SNLRKLYPSV EKPSTP

Type	Start	End	Confidence
Cytoplasmic	1	30	0.57
Transmembrane Helix	31	45	0.30
Non-Cytoplasmic	46	89	0.53
Transmembrane Helix	90	112	0.49
Cytoplasmic	113	123	0.39
Transmembrane Helix	124	141	0.57
Non-Cytoplasmic	142	166	0.66