YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12857245
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.53
Transmembrane Helix	8	29	0.88
Cytoplasmic	30	37	0.54
Transmembrane Helix	38	59	0.93
Non-Cytoplasmic	60	64	0.45
Transmembrane Helix	65	86	0.74
Cytoplasmic	87	88	0.44
Transmembrane Helix	89	109	0.75
Non-Cytoplasmic	110	125	0.69
Transmembrane Helix	126	145	0.89
Cytoplasmic	146	189	0.85
Transmembrane Helix	190	213	0.86
Non-Cytoplasmic	214	233	0.90
Transmembrane Helix	234	256	0.90
Cytoplasmic	257	266	0.86
Transmembrane Helix	267	288	0.94
Non-Cytoplasmic	289	294	0.79
Transmembrane Helix	295	316	0.94
Cytoplasmic	317	325	0.80
Transmembrane Helix	326	345	0.96
Non-Cytoplasmic	346	348	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNATDLTT GYLSSAAAIL LFGSNFVPLK KYDTGDGMFL QWVLCAAIWL VALVVNLILH  60
   61 CPKFWPFAML GGCIWATGNI AVVPIIKTIG LGLGILIWGS FNTLTGWASS RFGWFGMDAE 120
  121 EVSKPMLNYV GAGLSVVSAL TFLFIKSEIP NNPGSSDTTP LMTEHVINRT EDRSADSSWV 180
  181 DRLSTTYHRI VGCSLAVISG ILYGSTFVPI IYIKDHSRRN DSMYAGASQY DLDYVFAHSS 240
  241 GIFLTSTVYF VAYCVAMKNR PKLYPEAVLP GLLSGVLWAI ATCCWFIANH SLSAVISFPI 300
  301 ITAGPGLIAA LWGILIFKEI QGLRNYLLMM LAFCIILAGA LCTAFSKV