YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19527034, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	219	0.81
Transmembrane Helix	220	243	0.88
Non-Cytoplasmic	244	268	0.73
Transmembrane Helix	269	288	0.75
Cytoplasmic	289	306	0.92
Transmembrane Helix	307	328	0.92
Non-Cytoplasmic	329	335	0.80
Transmembrane Helix	336	357	0.93
Cytoplasmic	358	396	0.97
Transmembrane Helix	397	417	0.75
Non-Cytoplasmic	418	424	0.66
Transmembrane Helix	425	447	0.77
Cytoplasmic	448	461	0.79
Transmembrane Helix	462	481	0.86
Non-Cytoplasmic	482	492	0.78
Transmembrane Helix	493	515	0.87
Cytoplasmic	516	533	0.90
Transmembrane Helix	534	554	0.78
Non-Cytoplasmic	555	565	0.75
Transmembrane Helix	566	587	0.79
Cytoplasmic	588	626	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSRKFVEGE VVRGRWPGSS LYYEVEILSH DNKSQLYTVK YKDGTELELK ESDIKPLKSF  60
   61 KQRKSGSISS SPSRRRGSRS RSRSRSRSRS PGRAPKGSRR SVSASHEGDV KEKKEKEMRR 120
  121 EILQVKLTPL VLKPFGNSVS VYNGEPEHME KNATPYKDKQ ERIILSTEDR YIVAQYSLRP 180
  181 RREEVKAKEI ESEEQNLVTK GPAPLGTFQV TTPQRKDLEF GGVPGAVLIM LGLPACVLLL 240
  241 LLQCRQKDPG LLHFPPPLPA LHELWEPRVC GVYLLWFFVQ ALFHLLPVGK VAEGTPLVDG 300
  301 RRLQYRLNGL YAFILTSAAL GAAVFWGVEL CYLYTHFLQL ALAATGFSVL LSAYLYVRSL 360
  361 RAPREELSPA SSGNAVYDFF IGRELNPRLG AFDLKFFCEL RPGLIGWVVI NLVMLLMEMK 420
  421 IQERAAPSLA MILVNSFQLL YVVDALWNEE ALLTSMDIMH DGFGFMLAFG DLVWVPFTYS 480
  481 LQAFYLVSHP HDLSWPLASV IIALKLCGYV IFRCANSQKN AFRKNPTDPK LAHLKTIHTS 540
  541 TGKSLLVSGW WGFVRHPNYL GDLIMALAWS LPCGFNHLLP YFYIIYFTAL LIHREARDEH 600
  601 QCRRKYGLAW EKYCQRVPYR IFPYIY