YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPT_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.62
Transmembrane Helix	12	34	0.87
Cytoplasmic	35	59	0.60
Transmembrane Helix	60	81	0.91
Non-Cytoplasmic	82	96	0.57
Transmembrane Helix	97	116	0.96
Cytoplasmic	117	127	0.55
Transmembrane Helix	128	147	0.87
Non-Cytoplasmic	148	166	0.53
Transmembrane Helix	167	190	0.83
Cytoplasmic	191	196	0.43
Transmembrane Helix	197	215	0.75
Non-Cytoplasmic	216	223	0.70
Transmembrane Helix	224	245	0.91
Cytoplasmic	246	250	0.69
Transmembrane Helix	251	273	0.85
Non-Cytoplasmic	274	279	0.61
Transmembrane Helix	280	299	0.72
Cytoplasmic	300	380	0.88
Transmembrane Helix	381	401	0.79
Non-Cytoplasmic	402	410	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWAFPELPLP LPLLVNLIGS LLGFVATVTL IPAFRSHFIA ARLCGQDLNK LSQQQIPESQ  60
   61 GVISGAVFLI ILFCFIPFPF LNCFVEEQCK AFPHHEFVAL IGALLAICCM IFLGFADDVL 120
  121 NLRWRHKLLL PTAASLPLLM VYFTNFGNTT IVVPKPFRWI LGLHLDLGIL YYVYMGLLAV 180
  181 FCTNAINILA GINGLEAGQS LVISASIIVF NLVELEGDYR DDHIFSLYFM IPFFFTTLGL 240
  241 LYHNWYPSRV FVGDTFCYFA GMTFAVVGIL GHFSKTMLLF FMPQVFNFLY SLPQLFHIIP 300
  301 CPRHRMPRLN AKTGKLEMSY SKFKTKNLSF LGTFILKVAE NLRLVTVHQG ESEDGAFTEC 360
  361 NNMTLINLLL KVFGPIHERN LTLLLLLLQV LSSAATFSIR YQLVRLFYDV