YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22AK_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.58
Transmembrane Helix	16	38	0.78
Non-Cytoplasmic	39	138	0.64
Transmembrane Helix	139	158	0.79
Cytoplasmic	159	166	0.66
Transmembrane Helix	167	187	0.78
Non-Cytoplasmic	188	191	0.65
Transmembrane Helix	192	213	0.83
Cytoplasmic	214	222	0.81
Transmembrane Helix	223	244	0.93
Non-Cytoplasmic	245	250	0.77
Transmembrane Helix	251	270	0.95
Cytoplasmic	271	339	0.96
Transmembrane Helix	340	359	0.93
Non-Cytoplasmic	360	368	0.80
Transmembrane Helix	369	389	0.91
Cytoplasmic	390	397	0.70
Transmembrane Helix	398	417	0.92
Non-Cytoplasmic	418	428	0.79
Transmembrane Helix	429	448	0.94
Cytoplasmic	449	458	0.84
Transmembrane Helix	459	480	0.81
Non-Cytoplasmic	481	489	0.60
Transmembrane Helix	490	508	0.85
Cytoplasmic	509	556	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFTDLLDAL GGVGRFQLVY TALLLLPCGL LACHTFLQNF TAAAPPHHCQ HPANYTEPTT  60
   61 NVSGVWLRAA IPLNQHGDPE PCRRYVEPQW ALLKPNASSH GVATEGCKDG WVYDRSIFPS 120
  121 TIVMEWDLVC EARTLRDLAQ SIYMSGVLVG AALFGGLADR LGRKAPLVWS YLQLAVSGAA 180
  181 TAYVGSFSAY CVFRFLMGMT FSGIILNSLS LVVEWMPTRG RTVAGILLGF SFTLGQLILA 240
  241 GVAYLIRPWR WLQFAVSAPF LVFFLYSWWL PESSRWLLLH GKAQQAVQNL QKVAMMNGRK 300
  301 AEGERLTTEV VSSYIQDEFA SVRTSNSILD LFRTPAIRRV TCCLMGVWFS NSVAYYGLAM 360
  361 DLQKFGLSIY LVQALFGIID IPAMLVATTT MIYVGRRATV SSFLILAGLM VIANMFMPED 420
  421 LQTLRTVQAA LGKGCLASSF ICVYLFTGEL YPTEIRQMGM GFASVNARLG GLVAPLITTL 480
  481 GEISPVLPPV SFGATSVLAG MAVACFLTET RNVPLVETIA AMERRVKQGR SKRDTEQKSE 540
  541 EISLQQLGAS PLKETI