YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STEA4_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKAHADEFP LTTDSSEKQG VVCIFGTGDF GKSLGLKMLQ CGYSIVFGSR NPQVSSLLPR  60
   61 GAEVLSYSEA ASKSDIIILA MHREHYDSLT ELVDYLKGKV LVDVSNNRKI NQYPESNAEY 120
  121 LAQLEPGAHV VKAFNTISAW ALQSGTLDAS RQVFVCGNDS KAKQRVMDIA RTLGLTPLDQ 180
  181 GSLMAASEIE NYPLQLFPMW RFPFYLSSVL CVFFFVYCAI REVIYPYVNG KTDATYRLAI 240
  241 SIPNRVFPIT ALILLALVYL PGILAAILQL YRGTKYRRFP NWLDHWMLCR KQLGLVALGF 300
  301 AFLHVIYTLV IPIRYYVRWR LRNATITQAL TNKDSPFITS YAWINDSYLA LGILGFFLFL 360
  361 LLGITSLPSV SNMVNWREFR FVQSKLGYLT LVLCTAHTLV YGGKRFLSPS ILRWSLPSAY 420
  421 ILALVIPCAV LVLKCILIMP CIDKTLTRIR QGWERNSKYT QSALNGKSDI

Type	Start	End	Confidence
Cytoplasmic	1	201	0.97
Transmembrane Helix	202	220	0.93
Non-Cytoplasmic	221	248	0.87
Transmembrane Helix	249	271	0.93
Cytoplasmic	272	291	0.91
Transmembrane Helix	292	311	0.94
Non-Cytoplasmic	312	347	0.92
Transmembrane Helix	348	370	0.89
Cytoplasmic	371	383	0.82
Transmembrane Helix	384	401	0.92
Non-Cytoplasmic	402	418	0.79
Transmembrane Helix	419	438	0.96
Cytoplasmic	439	470	0.94