YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PD2R_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNESYRCQTS TWVERGSSAT MGAVLFGAGL LGNLLALVLL ARSGLGSCRP GPLHPPPSVF  60
   61 YVLVCGLTVT DLLGKCLISP MVLAAYAQNQ SLKELLPASG NQLCETFAFL MSFFGLASTL 120
  121 QLLAMAVECW LSLGHPFFYQ RHVTLRRGVL VAPVVAAFCL AFCALPFAGF GKFVQYCPGT 180
  181 WCFIQMIHKE RSFSVIGFSV LYSSLMALLV LATVVCNLGA MYNLYDMHRR QRHYPHRCSR 240
  241 DRAQSGSDYR HGSLHPLEEL DHFVLLALMT VLFTMCSLPL IYRAYYGAFK LENKAEGDSE 300
  301 DLQALRFLSV ISIVDPWIFI IFRTSVFRML FHKVFTRPLI YRNWSSHSQQ SNVESTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.66
Transmembrane Helix	19	41	0.90
Cytoplasmic	42	58	0.58
Transmembrane Helix	59	79	0.76
Non-Cytoplasmic	80	106	0.74
Transmembrane Helix	107	134	0.75
Cytoplasmic	135	147	0.73
Transmembrane Helix	148	170	0.92
Non-Cytoplasmic	171	200	0.81
Transmembrane Helix	201	225	0.84
Cytoplasmic	226	261	0.86
Transmembrane Helix	262	282	0.94
Non-Cytoplasmic	283	303	0.79
Transmembrane Helix	304	327	0.79
Cytoplasmic	328	357	0.85