YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PACR_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	155	0.99
Transmembrane Helix	156	176	0.91
Cytoplasmic	177	186	0.81
Transmembrane Helix	187	210	0.82
Non-Cytoplasmic	211	236	0.87
Transmembrane Helix	237	256	0.84
Cytoplasmic	257	265	0.78
Transmembrane Helix	266	287	0.95
Non-Cytoplasmic	288	307	0.90
Transmembrane Helix	308	332	0.88
Cytoplasmic	333	378	0.96
Transmembrane Helix	379	397	0.92
Non-Cytoplasmic	398	413	0.81
Transmembrane Helix	414	435	0.82
Cytoplasmic	436	496	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTLQLSLT ALLLLPMAIA MHSDCIFKKE QAMCLERIQR ANDLMGLNES SPGCPGMWDN  60
   61 ITCWKPAQIG EMVLVSCPEV FRIFNPDQVW MTETIGDSGF ADSNSLEITD MGVVGRNCTE 120
  121 DGWSEPFPHY FDACGFDDYE PESGDQDYYY LSVKALYTVG YSTSLVTLTT AMVILCRFRK 180
  181 LHCTRNFIHM NLFVSFMLRA ISVFIKDWIL YAEQDSSHCF VSTVECKAVM VFFHYCVVSN 240
  241 YFWLFIEGLY LFTLLVETFF PERRYFYWYT IIGWGTPTVC VTVWAVLRLY FDDAGCWDMN 300
  301 DSTALWWVIK GPVVGSIMVN FVLFIGIIII LVQKLQSPDM GGNESSIYFS CVQKCYCKPQ 360
  361 RAQQHSCKMS ELSTITLRLA RSTLLLIPLF GIHYTVFAFS PENVSKRERL VFELGLGSFQ 420
  421 GFVVAVLYCF LNGEVQAEIK RKWRSWKVNR YFTMDFKHRH PSLASSGVNG GTQLSILSKS 480
  481 SSQLRMSSLP ADNLAT