YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1808954
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHGFGCFVF FFLISLSSLW ASEDSTCNST LPLCHLATTL DCCKCGHSCS RESIMVAFKG  60
   61 VWTQAFWKAV SAEFLATLIF VLGVGSTINW GGSENPLPVD MVLISLCFGL SIATMVQCLG 120
  121 HISGGHINPA VTVAMVCTRK ISIAKSVFYI IAQCLGAIIG AGILYLVTPP SVVGGLGVTT 180
  181 VHGNLTAGHG LLVELIITFQ LVFTVFASCD SKRTDVTGSI ALAIGFSVAI GHLFAINYTG 240
  241 ASMNPARSFG PAVIMGNWAN HWIYWVGPIM GAVLAGALYE YVFCPDVELK RRLKEAFSKA 300
  301 AQQTKGSYME VEDNRSQVET EDLILKPGVV HVIDIDRGEE KKGRDSSGEV LSSV

Type	Start	End	Confidence
Cytoplasmic	1	64	0.65
Transmembrane Helix	65	88	0.76
Non-Cytoplasmic	89	100	0.64
Transmembrane Helix	101	125	0.81
Cytoplasmic	126	146	0.76
Transmembrane Helix	147	168	0.92
Non-Cytoplasmic	169	184	0.93
Transmembrane Helix	185	207	0.90
Cytoplasmic	208	215	0.87
Transmembrane Helix	216	236	0.92
Non-Cytoplasmic	237	261	0.89
Transmembrane Helix	262	283	0.96
Cytoplasmic	284	354	0.99