YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPA3M_MOUSE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFIAALGIL MAGICPTVLC FSDDTWGIDI LLHKNQESGT PDDSLTLASI NTDFAFSLYK  60
   61 ELVLKNPDKN IVFSPLSISA ALALVSLGAK GNTLEEILEG LKFNLTETSE ADIHQGFGHL 120
  121 LQRLSQPEDQ DQINIGNAMF IEKDLQILAE FHEKARALYQ TEAFTADFQK PTEAKNLIND 180
  181 YVSNQTQGMI KELISELDTD TLMVLVNYIY FKGKWKISFD PQDTFESEFY LDEKRSVKVP 240
  241 MMKMKFLTTR HFRDEELSCS VLELKYTGNA SALFILPDQG RMQQVEASLQ PETLRKWWKS 300
  301 LKTRKIGELY LPKFSISTDY NLKDILPELG IKEIFSKQAD LSGITGTKDL SVSQVVHKAV 360
  361 LDVAETGTEA AAATGFIFGF RSRRLQTMTV QFNRPFLMVI SHTGVQTTLF MAKVTNPK

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	418	0.99