YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ELN_MOUSE, ELS_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.73
Transmembrane Helix	7	26	0.71
Non-Cytoplasmic	27	44	0.84
Transmembrane Helix	45	66	0.91
Cytoplasmic	67	73	0.87
Transmembrane Helix	74	96	0.89
Non-Cytoplasmic	97	102	0.69
Transmembrane Helix	103	122	0.92
Cytoplasmic	123	130	0.73
Transmembrane Helix	131	153	0.87
Non-Cytoplasmic	154	167	0.70
Transmembrane Helix	168	191	0.81
Cytoplasmic	192	318	0.65
Transmembrane Helix	319	340	0.55
Non-Cytoplasmic	341	341	0.43
Transmembrane Helix	342	363	0.76
Cytoplasmic	364	383	0.65
Transmembrane Helix	384	409	0.67
Non-Cytoplasmic	410	453	0.62
Transmembrane Helix	454	477	0.74
Cytoplasmic	478	484	0.60
Transmembrane Helix	485	505	0.76
Non-Cytoplasmic	506	510	0.60
Transmembrane Helix	511	533	0.80
Cytoplasmic	534	540	0.72
Transmembrane Helix	541	562	0.85
Non-Cytoplasmic	563	572	0.64
Transmembrane Helix	573	594	0.86
Cytoplasmic	595	607	0.85
Transmembrane Helix	608	630	0.88
Non-Cytoplasmic	631	639	0.71
Transmembrane Helix	640	662	0.84
Cytoplasmic	663	671	0.72
Transmembrane Helix	672	691	0.83
Non-Cytoplasmic	692	699	0.60
Transmembrane Helix	700	718	0.77
Cytoplasmic	719	726	0.68
Transmembrane Helix	727	750	0.84
Non-Cytoplasmic	751	756	0.61
Transmembrane Helix	757	780	0.82
Cytoplasmic	781	788	0.70
Transmembrane Helix	789	812	0.61
Non-Cytoplasmic	813	835	0.65
Transmembrane Helix	836	855	0.67
Cytoplasmic	856	860	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLTAVVPQ PGVLLILLLN LLHPAQPGGV PGAVPGGLPG GVPGGVYYPG AGIGGLGGGG  60
   61 GALGPGGKPP KPGAGLLGTF GAGPGGLGGA GPGAGLGAFP AGTFPGAGAL VPGGAAGAAA 120
  121 AYKAAAKAGA GLGGVGGVPG GVGVGGVPGG VGVGGVPGGV GVGGVPGGVG GIGGIGGLGV 180
  181 STGAVVPQVG AGIGAGGKPG KVPGVGLPGV YPGGVLPGTG ARFPGVGVLP GVPTGTGVKA 240
  241 KAPGGGGAFS GIPGVGPFGG QQPGVPLGYP IKAPKLPGGY GLPYTNGKLP YGVAGAGGKA 300
  301 GYPTGTGVGS QAAAAAAKAA KYGAGGAGVL PGVGGGGIPG GAGAIPGIGG IAGAGTPAAA 360
  361 AAAKAAAKAA KYGAAGGLVP GGPGVRLPGA GIPGVGGIPG VGGIPGVGGP GIGGPGIVGG 420
  421 PGAVSPAAAA KAAAKAAKYG ARGGVGIPTY GVGAGGFPGY GVGAGAGLGG ASPAAAAAAA 480
  481 KAAKYGAGGA GALGGLVPGA VPGALPGAVP AVPGAGGVPG AGTPAAAAAA AAAKAAAKAG 540
  541 LGPGVGGVPG GVGVGGIPGG VGVGGVPGGV GPGGVTGIGA GPGGLGGAGS PAAAKSAAKA 600
  601 AAKAQYRAAA GLGAGVPGFG AGAGVPGFGA GAGVPGFGAG AGVPGFGAGA GVPGFGAGAV 660
  661 PGSLAASKAA KYGAAGGLGG PGGLGGPGGL GGPGGLGGAG VPGRVAGAAP PAAAAAAAKA 720
  721 AAKAAQYGLG GAGGLGAGGL GAGGLGAGGL GAGGLGAGGL GAGGLGAGGL GAGGGVSPAA 780
  781 AAKAAKYGAA GLGGVLGARP FPGGGVAARP GFGLSPIYPG GGAGGLGVGG KPPKPYGGAL 840
  841 GALGYQGGGC FGKSCGRKRK