YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	T2R39_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQPSNYWKQ DVLPLSILML TLVATECTIG IIASGIVMAV NAVSWVQKKA ISITTRILLL  60
   61 LSVSRIGLQS IMLIEITSSI FNVAFYNSVL YRVSNVSFVF LNYCSLWFAA LLSFFHFVKI 120
  121 ANFSYPLFFK LKWRISELMP WLLWLSVFIS FSSSMFFSKH KFTVNNNNSL SNNICNFTMK 180
  181 LYVVETNVVN VSFLFISGIL PPLTMFVATA TLLIFSLRRH TLNMRNSATG SRNPCIEAHM 240
  241 QAIKETSCFL FLYILNAAAL LLSTSNIVDA SLFWSIVIRI VLPVYPAGHS VLLIQNNPGL 300
  301 RRTWKHLQSQ IHLYLQNRF

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.89
Transmembrane Helix	17	45	0.83
Cytoplasmic	46	56	0.87
Transmembrane Helix	57	81	0.75
Non-Cytoplasmic	82	98	0.76
Transmembrane Helix	99	118	0.91
Cytoplasmic	119	137	0.85
Transmembrane Helix	138	158	0.91
Non-Cytoplasmic	159	192	0.94
Transmembrane Helix	193	215	0.91
Cytoplasmic	216	247	0.91
Transmembrane Helix	248	268	0.87
Non-Cytoplasmic	269	274	0.69
Transmembrane Helix	275	294	0.82
Cytoplasmic	295	319	0.83