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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TRPC1_MOUSE, TRP...
Protein type: Transmembrane
Type Confidence: 0.87
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAPPPSPGL PPSWAAMMAA LYPSTDLSGV SSSSLPSSPS SSSPNEVMAL KDVREVKEEN  60
   61 TLNEKLFLLA CDKGDYYMVK KILEENSSGD LNINCVDVLG RNAVTITIEN ESLDILQLLL 120
  121 DYGCQSADAL LVAIDSEVVG AVDILLNHRP KRSSRPTIVK LMERIQNPEY STTMDVAPVI 180
  181 LAAHRNNYEI LTMLLKQDVS LPKPHAVGCE CTLCSAKNKK DSLRHSRFRL DIYRCLASPA 240
  241 LIMLTEEDPI LRAFELSADL KELSLVEVEF RNDYEELARQ CKMFAKDLLA QARNSRELEV 300
  301 ILNHTSSDEP LDKRGLLEER MNLSRLKLAI KYNQKEFVSQ SNCQQFLNTV WFGQMSGYRR 360
  361 KPTCKKIMTV LTVGIFWPVL SLCYLIAPKS QFGRIIHTPF MKFIIHGASY FTFLLLLNLY 420
  421 SLVYNEDKKN TMGPALERID YLLILWIIGM IWSDIKRLWY EGLEDFLEES RNQLSFVMNS 480
  481 LYLATFALKV VAHNKFHDFA DRKDWDAFHP TLVAEGLFAF ANVLSYLRLF FMYTTSSILG 540
  541 PLQISMGQML QDFGKFLGMF LLVLFSFTIG LTQLYDKGYT SKEQKDCVGI FCEQQSNDTF 600
  601 HSFIGTCFAL FWYIFSLAHV AIFVTRFSYG EELQSFVGAV IVGTYNVVVV IVLTKLLVAM 660
  661 LHKSFQLIAN HEDKEWKFAR AKLWLSYFDD KCTLPPPFNI IPSPKTICYM ISSLSKWICS 720
  721 HTSKGKVKRQ NSLKEWRNLK QKRDENYQKV MCCLVHRYLT SMRQKMQSTD QATVENLNEL 780
  781 RQDLSKFRNE IRDLLGFRTS KYAMFYPRN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle