YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RGR_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATRALPAG LGELEVLAVG TVLLMEALSG ISLNGLTIFS FCKTPDLRTP SNLLVLSLAL  60
   61 ADTGISLNAL VAAVSSLLRR WPHGSEGCQV HGFQGFATAL ASICGSAAVA WGRYHHYCTR 120
  121 RQLAWDTAIP LVLFVWMSSA FWASLPLMGW GHYDYEPVGT CCTLDYSRGD RNFISFLFTM 180
  181 AFFNFLVPLF ITHTSYRFME QKFSRSGHLP VNTTLPGRML LLGWGPYALL YLYAAIADVS 240
  241 FISPKLQMVP ALIAKTMPTI NAINYALHRE MVCRGTWQCL SPQKSKKDRT Q

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.87
Transmembrane Helix	17	41	0.82
Cytoplasmic	42	52	0.86
Transmembrane Helix	53	74	0.91
Non-Cytoplasmic	75	92	0.84
Transmembrane Helix	93	114	0.90
Cytoplasmic	115	122	0.91
Transmembrane Helix	123	145	0.86
Non-Cytoplasmic	146	173	0.92
Transmembrane Helix	174	196	0.90
Cytoplasmic	197	214	0.92
Transmembrane Helix	215	237	0.81
Non-Cytoplasmic	238	291	0.63